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Detailed information on CNT30674416


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523073Setaria viridisSetaria italica44.2520.92100150forward
CNT30552242Setaria viridisOryza glaberrima20.3516.4395.6569forward
CNT30455220Setaria viridisSaccharum spontaneum25.3711.394.1986forward
CNT3015172Setaria viridisZea mays22.7112.1592.2177forward
CNT3066598Setaria viridisLeersia perrieri25.9614.6293.1888forward
CNT30363793Setaria viridisSorghum bicolor20.9414.9587.3271forward
CNT30595582Setaria viridisOryza meridionalis20.3513.1295.6569forward
CNT30369166Setaria viridisOryza glumipatula20.3513.3795.6569forward
CNT3099716Setaria viridisOryza rufipogon20.3512.1995.6569forward
CNT30574883Setaria viridisOryza barthii20.3520.4195.6569forward
CNT30115583Setaria viridisOryza nivara20.3516.6395.6569forward
CNT30603545Setaria viridisOryza punctata20.3513.0994.269forward

Expression of CNT30674416

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MHIHVRDTCLRPNPDTCVVVDRARVKPISVGPDDVALLALVELAGAGVEVLLHRGLAHHEVAGACL*

Sequence

>CNT30674416
CTTTATTCAGGTCACGAGCTTATTTTCGTAGTACGTACAGAGGCTGCGTGCAAGCACGCCAGCAAAGTACGTGGATAAGGTAGACCTCGCACACACAAAC
TTACAATTTCATACATACGGAGGACATGCACATACACGTACGCGATACCTGCCTCCGGCCCAATCCAGATACGTGCGTCGTCGTCGATCGAGCCCGCGTG
AAGCCGATCTCAGTCGGACCTGACGACGTAGCTCTCCTTGCGCTCGTGGAACTCGCCGGTGCAGGTGTTGAAGTCCTCCTCCACCGTGGTCTCGCGCATC
ACGAAGTTGCCGGAGCCTGCTTGTGAATTGTGTGAGACT