Detailed information on CNT30674332


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30313757Setaria viridisCamelina sativa21.948.7890.9177forward
CNT3051057Setaria viridisCucumis sativus15.9524.4587.556forward

Expression of CNT30674332

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MSQCHNRILDFIEVLHSLTHINNHVRASGLRSKAPNLLGKILVPTKLLREDL

>peptide 2 (28 aa)
MFGPVVSGPKHQIFLARSLSQPNSSERIL

>peptide 3 (59 aa)
MGTSSTNHQNLELVLELRKRGHLLLETLPLADIQHQLSSLGASLQRIRAHHVPVPQQNP*

Sequence

>CNT30674332
ATGTAGTTCCCGTTACAGTAGACGAATTGGCCATTAAACCAGCATGGGTACCAGCAGCACAAACCACCAAAATTTAGAGCTTGTCCTCGAACTCAGAAAG
AGGGGTCATCTGCTCCTTGAGACCCTTCCTCTTGCGGATATCCAACACCAGCTGAGCAGCCTGGGAGCCAGCCTCCAGAGGATCAGAGCCCATCATGTCC
CAGTGCCACAACAGAATCCTTGATTTCATTGAGGTACTGCACTCCCTTACACATATCAACAACCATGTTCGGGCCAGTGGTCTCAGGTCCAAAGCACCAA
ATCTTCTTGGCAAGATCCTTGTCCCAACCAAACTCCTCAGAGAGGATCTTG