Detailed information on CNT30674320


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS3|TBB6_ORYSJ, E-value = 2e-61

BLAST vs NONCODE:
NONBNAT004015, E-value = 4e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534291Setaria viridisEucalyptus grandis53.9155.2682.67352forward
CNT30332119Setaria viridisDioscorea rotundata53.9155.4385.23352forward
CNT30149545Setaria viridisBrachypodium distachyon14.728.5792.7196forward

Expression of CNT30674320

Peptides detected in this lncRNA

>peptide 1 (35 aa)
EHTNSISNTVPKARLHSIRKIQASTATDSGRTVVR*

>peptide 2 (54 aa)
MFLASHICCVSSGTVRARYCWEPREVSGAKPTMKKWRRGKGIRFTASFRRSEFS*

>peptide 3 (79 aa)
MATKHVRNNPSKSACHRRLQPPEPHGHRSHMSFMLLSASVNSISSMPSPVYQCKKAFLLNMAVNCSLTLRNISWIEAVR*

>peptide 4 (95 aa)
MARVSSAHHVLGIPHLLCELRDSEGTVLLGATGGQWGEADHEEVETGEGDQVHCQLPEIRVQLTREPKAAGQSCLCTAQLGQCHAHHTPPPRTWHR

Sequence

>CNT30674320
GGAGCATACTAACAGCATAAGTAATACAGTACCAAAAGCAAGACTCCATAGCATAAGGAAAATACAAGCATCAACAGCGACGGACAGTGGCAGGACGGTG
GTACGCTAGCAGTAGTAACATGGCAACAAAACACGTAAGGAACAACCCATCGAAATCTGCCTGCCATAGAAGGCTACAACCACCAGAGCCTCATGGTCAC
AGATCTCACATGTCGTTCATGTTGCTCTCGGCCTCAGTGAACTCCATCTCGTCCATGCCCTCGCCTGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAACA
TGGCTGTGAACTGCTCGCTCACCCTCCGGAACATCTCCTGGATAGAGGCAGTGAGGTAACGCCCATGGCGAGGGTCAGCAGCGCACATCATGTTCTTGGC
ATCCCACATCTGCTGTGTGAGCTCAGGGACAGTGAGGGCACGGTACTGCTGGGAGCCACGGGAGGTCAGTGGGGCGAAGCCGACCATGAAGAAGTGGAGA
CGGGGGAAGGGGATCAGGTTCACTGCCAGCTTCCGGAGATCCGAGTTCAGCTGACCAGGGAACCTAAGGCAGCAGGTCAGAGTTGCCTGTGTACCGCCCA
GTTGGGTCAATGCCATGCTCATCACACACCACCTCCCAGAACTTGGCACCGAT