CANTATAdb - search

Detailed information on CNT30674319

BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-111

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693916	Setaria viridis	Oryza sativa	82.25	54.92	87.68	820	forward
CNT30641270	Setaria viridis	Nymphaea colorata	82.05	40.96	85.82	818	forward
CNT30528288	Setaria viridis	Eucalyptus grandis	82.45	61.34	87.96	822	forward
CNT30191758	Setaria viridis	Secale cereale	82.25	53.84	92.07	820	forward
CNT30305252	Setaria viridis	Triticum aestivum	74.52	87	90.71	743	forward
CNT30226205	Setaria viridis	Hordeum vulgare	82.25	79.46	89.76	820	forward
CNT30553671	Setaria viridis	Oryza glaberrima	82.25	70.51	87.07	820	forward
CNT30242602	Setaria viridis	Avena sativa	82.05	71.57	91.44	818	forward
CNT30461176	Setaria viridis	Saccharum spontaneum	82.25	24.05	89.39	820	forward
CNT30141881	Setaria viridis	Lolium perenne	82.05	55.31	90.95	818	forward
CNT307928	Setaria viridis	Zea mays	82.45	68.96	88.56	822	forward
CNT30229037	Setaria viridis	Ananas comosus	81.75	52.72	87.24	815	forward
CNT3067522	Setaria viridis	Leersia perrieri	82.25	66.34	85.85	820	forward
CNT30685426	Setaria viridis	Triticum urartu	82.25	35.18	91.46	820	forward
CNT30722025	Setaria viridis	Triticum spelta	64.79	72.91	90.87	646	forward
CNT30348745	Setaria viridis	Eragrostis tef	82.05	73.63	86.8	818	forward
CNT30368619	Setaria viridis	Sorghum bicolor	82.25	71.06	86.46	820	forward
CNT30595768	Setaria viridis	Oryza meridionalis	81.34	58.98	88.04	811	forward
CNT30110940	Setaria viridis	Oryza longistaminata	82.45	30.31	87.59	822	forward
CNT30321313	Setaria viridis	Asparagus officinalis	77.73	59.12	85.94	775	forward
CNT30116770	Setaria viridis	Oryza nivara	82.45	58.8	87.59	822	forward
CNT30593897	Setaria viridis	Eragrostis curvula	82.25	73.02	91.22	820	forward

Expression of CNT30674319

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVLPVRVLTKICIPPLSLSTRWRVDSFWML*

>peptide 2 (88 aa)
MFTNTTGGHRTCTSRRPGHRTQHDTDNLHWRDNQTCEPMDDSSTMSPVKLLATPEAKHQLLAGKDQTLLVRGDALLVLNLGLHVVNRV*

>peptide 3 (61 aa)
MRRCWSGGMPSLSWILAFTLSIVSEDSTSSVMVLPVRVLTKICMPPLSLSTKWRVDSFWML*

>peptide 4 (61 aa)
MRRCWSGGMPSLSWILAFTLSIVSEDSTSSVMVLPVRVLTKICIPPLSLSTRWRVDSFWML*

>peptide 5 (38 aa)
MSLCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVL

>peptide 6 (45 aa)
KCSQTQPEDIGLAPVEDQDTEHSTTQTISIGETTKLVNPWTTAAQ*

Sequence

>CNT30674319
AAATGTTCACAAACACAACCGGAGGACATAGGACTTGCACCAGTAGAAGACCAGGACACAGAACACAGCACGACACAGACAATCTCCATTGGAGAGACAA
CCAAACTTGTGAACCCATGGACGACAGCAGCACAATGAGCCCTGTGAAGTTACTGGCCACCCCGGAGGCGAAGCACCAGCTGCTTGCCGGCAAAGATCAG
ACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATCGTGTCTGAGGACTCGACCTCAAGAGTGATGGTCTTGCCA
GTGAGGGTCTTGACGAAGATCTGCATTCCACCCCTGAGCCTGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCAT
CCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCTGAGGA
CTCGACCTCAAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCATTCCACCCCTGAGCCTGAGCACGAGGTGGAGGGTGGACTCCTTCTGG
ATGTTGTAATCAGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGG
CCTTCACGTTGTCGATCGTGTCTGAGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCTCCCCTGAGCCTGAG
CACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTGCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGG
GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA