CANTATAdb - search

Detailed information on CNT30674232

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30371505	Setaria viridis	Oryza glumipatula	39	78.95	98.46	195	reverse complement
CNT30576588	Setaria viridis	Oryza barthii	25.2	28.7	99.21	126	forward

Expression of CNT30674232

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MPPTFILSQDRTLHEIHSCITYSFLIRRQSGFGIVFPSKDNLYPCASDYWPGVRH

>peptide 2 (57 aa)
MLIPQIPSLFLLREKKLTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQCG*

>peptide 3 (41 aa)
MRFIVALLIASLFVDKADSELSFLPRITCIHALQIIGLEFAT

Sequence

>CNT30674232
GATGCTTATTCCTCAGATACCGTCATTGTTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTT
TCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTAAT
CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGTTAATCAGACGCGAGCCCCTCCTTGGGCAGGTTCTTACGCGTTACTCACCTGTTCGCCACTGGAAA
CACCACTTCCCATTCGATTTGCATGTGTTAAGCATGCCGCCAACGTTCATCCTGAGCCAGGATCGAACTCTCCATGAGATTCATAGTTGCATTACTTATA
GCTTCCTTATTCGTAGACAAAGCGGATTCGGAATTGTCTTTCCTTCCAAGGATAACTTGTATCCATGCGCTTCAGATTATTGGCCTGGAGTTCGCCACCA