Detailed information on CNT30674192


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526368Setaria viridisPhaseolus vulgaris28.764.0887.6965forward
CNT30398713Setaria viridisTriticum turgidum36.2830.1589.0282forward
CNT30567579Setaria viridisActinidia chinensis31.4220.787.3271forward
CNT3085325Setaria viridisVigna radiata40.2712.8783.5291forward
CNT30511681Setaria viridisSolanum lycopersicum26.1117.7789.8359forward
CNT30668910Setaria viridisTriticum dicoccoides36.2829.1889.0282forward
CNT308572Setaria viridisZea mays39.8231.0391.1190forward
CNT30714890Setaria viridisMalus domestica golden36.7329.5484.3483forward
CNT30359648Setaria viridisLactuca sativa23.4513.5988.6853forward
CNT30704829Setaria viridisPrunus avium30.0910.9585.2968forward

Expression of CNT30674192

Peptides detected in this lncRNA

>peptide 1 (74 aa)
YYYHIHYSLFNVTTIPSITHFMLHPPPVCCAFCACFALAKLHVRLQVRYIVSYFKETLGTGSSSMNNTFRDTFPV

>peptide 2 (73 aa)
LLSHPLLFIQCYNHSQHHTLHVASTSGLLRFLCLLRPCQTTCSASGEIHRELLQRNPWHWLLEHEQHVQGYVPC

>peptide 3 (46 aa)
TTITSITLYSMLQPFPASHTSCCIHLRFAALFVLASPLPNYMFGFR*

Sequence

>CNT30674192
TACTACTATCACATCCATTACTCTTTATTCAATGTTACAACCATTCCCAGCATCACACACTTCATGTTGCATCCACCTCCGGTTTGCTGCGCTTTTTGTG
CTTGCTTCGCCCTTGCCAAACTACATGTTCGGCTTCAGGTGAGATACATCGTGAGTTACTTCAAAGAAACCCTTGGCACTGGCTCCTCGAGCATGAACAA
CACGTTCAGGGATACGTTCCCTGTCG