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Detailed information on CNT30674172

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3010648	Setaria viridis	Zea mays	29.12	26.51	92.59	189	forward
CNT30368760	Setaria viridis	Sorghum bicolor	45.45	32.07	91.86	295	forward
CNT30596333	Setaria viridis	Oryza meridionalis	39.91	31.06	83.78	259	forward
CNT30119340	Setaria viridis	Citrus clementina	16.64	37.89	87.96	108	forward

Expression of CNT30674172

Peptides detected in this lncRNA

>peptide 1 (39 aa)
QQQISSLKKLEFSVSFSISTSTILSIASLLFLMCIKAIS*

>peptide 2 (79 aa)
MSSASFSDMEFLAIILMMTSPLCAPPSIRDHGPISDIPKVTTICRIIVVSVQLATKFSSKTRCLRIATNYSTIACELAA*

>peptide 3 (42 aa)
MGRSQTYRKLRPSAGSLWSQYNWQQSSVVKQDAYGLLPIIAL*

Sequence

>CNT30674172
ACAACAACAAATATCGTCCCTAAAAAAACTAGAGTTTAGTGTCTCCTTCTCGATAAGCACCTCAACGATCTTGTCAATTGCCTCCCTGTTGTTCCTAATG
TGCATCAAAGCAATCTCATAGGCCTCATCTGACAACTGCTTCACTGCCGAATCAATGTCCTCCGCGAGCTTCTCCGACATGGAGTTCCTTGCCATCATTC
TCATGATGACATCCCCACTCTGTGCTCCACCCTCCATCAGAGACCATGGGCCGATCTCAGACATACCGAAAGTTACGACCATCTGCAGGATCATTGTGGT
CTCAGTACAATTGGCAACAAAGTTCAGTAGTAAAACAAGATGCCTACGGATTGCTACCAATTATAGCACTATAGCATGTGAGCTTGCAGCATAGTTTTGT
TCTTAGAACTCATAAAGATGTCAGTAATAAAACCACAAATGGTTCACAAAGACTTGCAAAGTTATGCTGACAAAACTGCAGCATAAAGAAAGTATACCTG
CTTCGCCAAGCCGGTAATTTGCTGCAAATCACCAGCAGCTCCGGTAGTCACCTCAGGCTCTCCAAATATAATCTCCTCAGCAGCTCTACCACCAAGACCG
CCAACAATTCTCGCAAAGAGTTGCTGCCTGGAGATCAGTGTCAAAGTTC