Detailed information on CNT30673993


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513357Setaria viridisJuglans regia52.0643.8994.5291reverse complement
CNT30221081Setaria viridisHordeum vulgare79.7922.0296.41446forward
CNT30555411Setaria viridisOryza glaberrima46.6964.7697.7261reverse complement
CNT30658798Setaria viridisTriticum dicoccoides54.7410097.71306reverse complement
CNT30149641Setaria viridisBrachypodium distachyon79.7922.1297.53446forward
CNT30603109Setaria viridisGaldieria sulphuraria9.8421.0790.9155reverse complement

Expression of CNT30673993

Peptides detected in this lncRNA

>peptide 1 (30 aa)
GGELQANNLKRMDTSYPWKERQFRIRFVYE*

>peptide 2 (32 aa)
MISSWSERMISHTGTETRPRLLREADQVDPCE*

Sequence

>CNT30673993
TGGTGGCGAACTCCAGGCCAATAATCTGAAGCGCATGGATACAAGTTATCCTTGGAAGGAAAGACAATTCCGAATCCGCTTTGTCTACGAATAAGGAAGC
TATAAGTAATGCAACTATGAATCTCATGGAGAGTTCGATCCTGGCTCAGGATGAACGTTGGCGGCATGCTTAACACATGCAAATCGAATGGGAAGTGGTG
TTTCCAGTGGCGAACAGGTGAGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAACTGGAAACGGTTGCTAATACCCCGTAGGCTGAGGAGCAAA
AGGAGAAATCCGACCAAGGAGGGGCTCGCGTCTGATTAACTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATTAGTAGCTGGTCCGAGAGGATGATC
AGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGATCAAGTTGACCCTTGCGAATAGCTTGATGCACTATCTCCCTTCAACCCTTTGA
GCGAAATGTGGCAAAAGAAAGAAAATCCATGGACCGACCCCATTATCTCCACCCTGTAG