Detailed information on CNT30673990


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30183892Setaria viridisSecale cereale42.9731.1992.12165forward
CNT30307914Setaria viridisTriticum aestivum42.9740.6492.12165forward
CNT30226503Setaria viridisHordeum vulgare42.4529.0691.41163forward
CNT30400060Setaria viridisTriticum turgidum42.9731.3192.12165forward
CNT30254921Setaria viridisAvena sativa22.6636.488.5187forward
CNT30370487Setaria viridisOryza glumipatula27.3410.9891.43105forward
CNT30102287Setaria viridisOryza rufipogon32.0336.1891.06123forward
CNT30576846Setaria viridisOryza barthii27.3428.7791.43105forward
CNT30580567Setaria viridisEchinochloa crusgalli53.3927.4497.07205forward

Expression of CNT30673990

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MWPARRGRPPTPAPSPSCQGPAPQAPRSRA

>peptide 2 (38 aa)
NKLYIIRGSRPAGKSPSLFVVQFLHARRQCPVTNQSHT*

>peptide 3 (56 aa)
MMMSPMLLCHGSARWVARFSSGPVPGYVACPPGTAAHSCAFTQLPRPSASGTKIPGC

Sequence

>CNT30673990
TAATAAGCTTTACATTATAAGGGGTTCCCGGCCGGCCGGAAAGTCGCCGTCGTTGTTCGTTGTACAGTTCCTGCACGCACGCAGGCAGTGCCCAGTAACC
AACCAATCACACACATAGAACATCATCCACACTCCCAGCACAGCCCCATCTCCTGTCTCGTCTCATCCTCTTCTCTCACAATCATCTCAGCTCAAGGGTA
GATCGTTCTGGGGATGATGATGTCGCCGATGTTGTTGTGCCACGGGTCGGCGAGGTGGGTAGCCAGGTTCTCCAGCGGCCCGGTGCCGGGGTATGTGGCC
TGCCCGCCGGGGACGGCCGCCCACTCCTGCGCCTTCACCCAGTTGCCAAGGCCCAGCGCCTCAGGCACCAAGATCCCGGGCTGC