Detailed information on CNT30673952


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30177674Setaria viridisSecale cereale66.6721.5897.26438reverse complement
CNT30384202Setaria viridisTriticum turgidum52.3620.7797.38344reverse complement
CNT30538116Setaria viridisBrassica napus46.7325.3395.44307forward
CNT3017925Setaria viridisZea mays66.6738.3998.17438forward
CNT3067405Setaria viridisLeersia perrieri63.0110094.2414forward
CNT30647597Setaria viridisRosa chinensis46.2759.6193.75304forward
CNT30203328Setaria viridisHelianthus annuus66.6753.2294.52438forward
CNT30680054Setaria viridisTriticum urartu66.6724.0197.49438reverse complement
CNT30409295Setaria viridisPapaver somniferum66.6777.5294.06438forward

Expression of CNT30673952

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MISSWSERMISHTGTETRPRLLREAVVGNFPQWAKA*

>peptide 2 (31 aa)
MGESLTEQCRVEVEGLRVVNFFSRRRNNDGI*

Sequence

>CNT30673952
GAGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAACTGGAAACGGTTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGAAATCCGACCAAGG
AGGGGCTCGCGTCTGATTAACTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATTAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGA
CACGGCCCAGACTCCTACGGGAGGCAGTAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCTACGGGTC
GTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATAAGCATCAGCTAACTCTATGCCAGCAGCCGCGGTAAGATAGAGGATGCAAGCG
TTATCCGAAATGATTGGGCGTAAAGCGTCTGTAGGTGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACT
CTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGACCAAATGGGATTAGAGACCTCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGCTG
TGCGACTCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGT