Detailed information on CNT30673938


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30183751Setaria viridisSecale cereale43.7511.9582.86105forward
CNT30307233Setaria viridisTriticum aestivum49.1717.9689.83118forward
CNT30554242Setaria viridisOryza glaberrima67.9233.9684.05163forward
CNT30688208Setaria viridisTriticum urartu46.2529.0690.99111forward
CNT30352142Setaria viridisEragrostis tef85.4227.2286.83205forward
CNT30368355Setaria viridisSorghum bicolor45.4219.3690.83109forward
CNT30150580Setaria viridisBrachypodium distachyon47.0815.6984.07113forward
CNT30102121Setaria viridisOryza rufipogon68.7520.8984.85165forward

Expression of CNT30673938

Peptides detected in this lncRNA

>peptide 1 (78 aa)
GPNVAHLDHGRHEVAVELRRAAAVLPHQRVLRPAVEELLVRVEQAPLRQQVRVVGVVEPRRRLQVHGRQVGAGRRVERR

>peptide 2 (53 aa)
PAPMLPILIMAATKSLLNCDGLLLYCLTSASCDPPLKSSWSEWNRPRCDSRFV*

Sequence

>CNT30673938
CCGGCCCCAATGTTGCCCATCTTGATCATGGCCGCCACGAAGTCGCTGTTGAACTGCGACGGGCTGCTGCTGTACTGCCTCACCAGCGCGTCCTGCGACC
CGCCGTTGAAGAGCTCCTGGTCCGAGTGGAACAGGCCCCGCTGCGACAGCAGGTTCGTGTAGTAGGCGTTGTCGAACCTCGCCGGCGTCTGCAGGTCCAT
GGGCGCCAGGTTGGGGCAGGAAGACGCGTAGAACGTCGTC