Detailed information on CNT30673865


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005034, E-value = 7e-132

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536068Setaria viridisEucalyptus grandis51.928.2289.3972forward
CNT30272810Setaria viridisChenopodium quinoa13.5668.2890.16254forward
CNT30708350Setaria viridisGlycine max15.736.887.41294forward
CNT3090144Setaria viridisSolanum tuberosum35.3416.8789.73662reverse complement
CNT30556102Setaria viridisOryza glaberrima25.7978.9296.69483forward
CNT30309694Setaria viridisCamelina sativa15.3859.6390.97288forward
CNT30610339Setaria viridisGossypium raimondii17.83100.386.83334reverse complement
CNT30627901Setaria viridisDaucus carota25.8441.3790.5484forward
CNT30479986Setaria viridisArabidopsis halleri4.3832.895.1282reverse complement
CNT30367812Setaria viridisSorghum bicolor8.2273.6895.45154reverse complement
CNT30646246Setaria viridisCannabis sativa12.9282.0388.84242reverse complement
CNT30318962Setaria viridisAsparagus officinalis43.5739.1492.52816forward
CNT30575379Setaria viridisOryza barthii16.571.6993.85309reverse complement
CNT30116753Setaria viridisOryza nivara20.989896.18393forward
CNT30726606Setaria viridisLupinus angustifolius25.6840.888.77481forward

Expression of CNT30673865

Peptides detected in this lncRNA

>peptide 1 (36 aa)
YRVEIMGSVHGFSFFCHISLKGLKGDSASSYSQGST*

>peptide 2 (54 aa)
MPPTFILSQDRTLHEIHSCITYSFLIRRQSGFGIVFPSKDNLYPCASDYWPGVRH

>peptide 3 (62 aa)
MHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSILPRLLA*

>peptide 4 (43 aa)
MFQSSCPLLKKSEPYKILSLPPGQLDSQPVITTTQLQERSSTN*

>peptide 5 (51 aa)
MLIPQIPSLFLLREKKLTTRRSLGRVSVPVWLIILSDQLLIIALVSYCLTN*

>peptide 6 (41 aa)
MRFIVALLIASLFVDKADSELSFLPRITCIHALQIIGLEFAT

>peptide 7 (43 aa)
MVSPWEITPMGRKRKGLRDPPGPTLDTLRSFFKPALLPFRVKR*

Sequence

>CNT30673865
CTACAGGGTGGAGATAATGGGGTCGGTCCATGGATTTTCTTTCTTTTGCCACATTTCGCTCAAAGGGTTGAAGGGAGATAGTGCATCAAGCTATTCGCAA
GGGTCAACTTGATCCTCTTCCCCAAGGATCCCAGATGGGGGAAGCCTAGGAGAGCCGCCGGCTCCAACTATCGTCCATGTACGATTCATACTAGATCTGA
CCAACTACCCATCCTACCTCCTCTACCTTTTTGACAGCCCATTTTTTTGTCTCAGTAGAGTCTTTCAGTGGCATGTTTCAGTCCTCTTGCCCATTACTTA
AAAAAAGTGAGCCGTACAAGATACTATCATTACCGCCTGGACAATTAGACAGCCAACCCGTAATCACAACGACCCAATTGCAAGAGCGGAGCTCTACCAA
CTGAGCTATATCCCCCCCCCCCCCCCCCCCCGAGCCAAGTGGATTATGCATGAAAGAGTCAGATGCTTCTTCTATTCTTTTCCCTGGCGCAGCTGGGCCA
TCCTGGACTTGAACCGGAGACCTCGCTCGTGAAGTAAATCATCGCCCCTACGATCCAACCAATTGGGATAGAATCAATAGACTCCTTTTCGGGAGCGATT
CATCCTTCCCAAACGCAGCATACAACTCCCCGTTGTACTGCGCTCTTCAAGTGTGCTTCTTCCCCCTTCTCCCCCTTACCATGGTAAGTCCTTGGGAAAT
AACTCCGATGGGTAGAAAAAGGAAGGGGTTAAGAGACCCTCCTGGCCCAACCCTAGACACTCTAAGATCCTTTTTCAAACCTGCTCTGCTCCCATTTCGA
GTCAAGAGATAGATAAATAGCCACATCCCATTGCACTGATTGGGGGCGCTCGTAGTGACTTAGGGGGTCGAAGACCAAGAAGTGGCTTATTTATACCAAG
CATTCCTCTTATGGCTAGATCCAATCTCCTGGTCCTTGCAGAAAGGAAAAAGAATTTCACGTTCTTCCTTTCAGAAAGGGAGGATTAGGGAAGTTCTATT
GATTACTGCTTTCTCCAGACCGTCGGGAATAGCATGAAAAAAAGGCTCGAATGGTACGATCCCTCCGTCACCCCAGAATGAAAGGGGTGATCTCGTAGTT
CTTGGTCTGTGAAGATGCGTTGTTAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTCCGATCTCAATGCATTTCACCGCTCCACC
GGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCATCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGCCACCTA
CAGACGCTTTACGCCCAATCATTTCGGATAACGCTTGCATCCTCTATCTTACCGCGGCTGCTGGCATAGAGTTAGCTGATGCTTATTCCTCAGATACCGT
CATTGTTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTAAT
CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGTTAATCAGACGCGAGCCCCTCCTTGGTCGGATTTCTCCTTTTGCTCCTCAGCCTACGGGGTATTAG
CAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCTGTTCGCCACTGGAAACACCACTTCCCATTCGATTTGCATGTG
TTAAGCATGCCGCCAACGTTCATCCTGAGCCAGGATCGAACTCTCCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTATTCGTAGACAAAGCGGAT
TCGGAATTGTCTTTCCTTCCAAGGATAACTTGTATCCATGCGCTTCAGATTATTGGCCTGGAGTTCGCCACCA