CANTATAdb - search

Detailed information on CNT30673800

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M8S0|MBS1_ARATH, E-value = 4e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30687535	Setaria viridis	Triticum urartu	14.88	28.34	92.13	89	forward

Expression of CNT30673800

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MTHVAAVTKSSSRLVAHHRPAAAAATDGLIIDRVGGYDWN*

>peptide 2 (65 aa)
MPGLGLELEEVASDATGVEEWRLRSFSGSKGSLGWRASWWICIDLMSGAEPFLTLLAFGFFAGMCE

Sequence

>CNT30673800
CAAAACAATAATTAATTGACGAACTTTACTTGCCAGTAAGAGAAAATAAACAAGCCACAGATTTGTGCCACCGAACCCGATCAACATTAGCAGTACCATC
AGGTCGCCGGCATCACAGCCAATCAACACATACTTAAACGTGCCGAGTTGCCGGCGACGAGATTTAAACAAACAGCAGCGAAGCCATAGCCACGGATATA
GTTAATTAACACGTCTTTCACATGACACATGTAGCAGCAGTAACGAAAAGCAGCAGCAGACTAGTAGCACACCACAGGCCAGCAGCGGCAGCCGCCACCG
ATGGATTAATTATAGATCGGGTTGGTGGATATGATTGGAATTGAAGGGAATTACCCCAAGCTAGCAAGCAAGCACGCTACTTCTTGAGGCTGCCGCGGAT
GCCGGGCTTGGGCTTGGAGTTGGAGGAGGTGGCCTCCGATGCGACGGGGGTGGAGGAGTGGAGGTTGAGGAGCTTCTCCGGCTCGAAGGGGAGCTTGGGG
TGGCGCGCCTCGTGGTGGATCTGCATCGACTTGATGTCGGGCGCCGAGCCCTTCCTAACCCTACTTGCGTTTGGGTTCTTCGCGGGGATGTGCGAGAG