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Detailed information on CNT30673759


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 8e-98

BLAST vs NONCODE:
NONSTUT000620, E-value = 1e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30345725Setaria viridisEragrostis tef41.5449.4192.12292forward

Expression of CNT30673759

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGMPSLSWILAFTLSMVSDDSTSRVMVLPVRVFTNICIPPLSLSTR*

>peptide 2 (53 aa)
TQQFQGSLIHHIVQPNCCTAASVHKTPPDNIRRTSDGHDSTMTQQQDTQTISI*

>peptide 3 (85 aa)
DTAISGFTYSSHSSTKLLHSSKCSQNTTRQHKTHIRRARLDHDTTTGHADNLHLRDKAGTRLVNPGMTAARQPQDLLATTETEHQ*

>peptide 4 (42 aa)
MRRCWSGGMPSLSWILAFTLSIVSEDSTSSVMVLPVRVFTKIC

Sequence

>CNT30673759
GACACAGCAATTTCAGGGTTCACTTATTCATCACATAGTTCAACCAAACTGCTGCACAGCAGCAAGTGTTCACAAAACACCACCAGACAACATAAGACGC
ACATCAGACGGGCACGACTCGACCATGACACAACAACAGGACACGCAGACAATCTCCATTTGAGAGACAAGGCAGGCACCAGACTTGTGAACCCAGGAAT
GACAGCAGCTCGACAGCCCCAAGACTTACTGGCCACCACGGAGACGGAGCACCAGTAAGAGTCTTGACAAAGATCTGCATACCACCACGCAGGCGGAGCA
CAAGGTGGAGAGTGGACTCCTTCTGTATGTTGTAGTCAGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG
AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGACGACTCAACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAT
ATCTGCATACCACCCCTGAGCCTCAGCACCAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGATGAGACGCTGCTGGTCCGGGGGGATGC
CCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCAGAGGACTCAACCTCAAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTG
CAT