Detailed information on CNT30673713


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554065Setaria viridisOryza glaberrima22.6426.9399.07108forward
CNT30352270Setaria viridisEragrostis tef23.4834.5794.64112forward
CNT30370505Setaria viridisOryza glumipatula20.1317.8810096forward
CNT30583094Setaria viridisEchinochloa crusgalli26.6263.1896.06127forward
CNT30117062Setaria viridisOryza nivara13.6328.2610065forward

Expression of CNT30673713

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MHGDDEDEGGDELGDVGLEGGRAEGVIEAAEGDVARHGGGGREGRGAD*

>peptide 2 (39 aa)
MLPDMVAVAGKGEELTDQGDRSYDGSHWLRIQIEDGASVP

>peptide 3 (43 aa)
MANQSSKRTHTASGALIRTKQRHAAMDAAHHSLNLTLCCQHYD*

Sequence

>CNT30673713
ACTGCAAATCGTGCAATAAATTAAAAAGTCAACGGAAGCGCACTGGTTCTTGAACCCCACCAACTTCACACTCACCACATTACAGAAAAGGAGGAAATTG
AGAAATAAACATGGCCAACCAATCATCCAAGCGCACGCACACAGCCTCCGGGGCTTTGATCCGAACCAAACAACGACATGCTGCAATGGATGCTGCTCAT
CACAGCCTGAATCTCACTTTATGCTGCCAACACTACGATTGAGAGAAACCAAACAACAATGCACGGCGACGACGAAGACGAGGGTGGAGATGAACTCGGC
GACGTAGGCCTTGAGGGAGGCCGCGCTGAAGGAGTCATCGAAGCGGCCGAAGGCGATGTTGCCCGACATGGTGGCGGTGGCAGGGAAGGGCGAGGAGCTG
ACTGACCAAGGGGATAGGAGCTACGATGGTAGCCACTGGCTGAGAATACAGATCGAGGACGGGGCGAGTGTGCCACC