Detailed information on CNT30673704


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30525798Setaria viridisPhaseolus vulgaris43.132.7793.68253reverse complement
CNT30394116Setaria viridisTriticum turgidum58.0982.3797.07341forward
CNT30460491Setaria viridisSaccharum spontaneum2366.8397.78135forward
CNT30347224Setaria viridisEragrostis tef28.2866.493.37166forward
CNT30371139Setaria viridisOryza glumipatula48.5557.5897.19285reverse complement
CNT30102660Setaria viridisOryza rufipogon51.1180.2195.33300forward
CNT30604605Setaria viridisOryza punctata36.893.5193.98216reverse complement

Expression of CNT30673704

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGESLTEQCRVEVEGLRVVNFFSRRRNNDAGVR*

>peptide 2 (36 aa)
MISSWSERMISHTGTETRPRLLREAVVGNFPQWAKA*

Sequence

>CNT30673704
GGCGAACAGGTGAGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAACTGGAAACGGTTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGAAA
TCCGACCAAGGAGGGGCTCGCGTCTGATTAACTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATTAGTAGCTGGTCCGAGAGGATGATCAGCCACAC
TGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGTAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAG
GCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAG
ATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGACCAAATGGGATTAGAGACCTCAGTAGTC
CTAGCCGTAAACGATGGATACTAGGTGCTGTGCGACTCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGT