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Detailed information on CNT30673696


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521727Setaria viridisSetaria italica100.1886.1697.99548forward
CNT30442646Setaria viridisAegilops tauschii35.2816.3891.71193forward
CNT30244624Setaria viridisAvena sativa31.4470.4985.47172forward
CNT30669298Setaria viridisTriticum dicoccoides35.2821.7390.16193forward
CNT309612Setaria viridisZea mays35.8320.8393.88196forward
CNT30344603Setaria viridisEragrostis tef28.731.2789.17157forward
CNT30364335Setaria viridisSorghum bicolor34.5521.6793.65189forward
CNT30102355Setaria viridisOryza rufipogon41.3238.1887.17226forward
CNT30580609Setaria viridisEchinochloa crusgalli83.1886.587.91455forward
CNT30497096Setaria viridisDigitaria exilis30.5343.2694.61167forward

Expression of CNT30673696

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MVTRPEVVALAQNGSRPERDDGASRLGTPTALQLRSPLDDAITIAAC*

>peptide 2 (79 aa)
MMMSPMLLPRGGAVEVGGAGLAGHPLGGHGDAAGGGGVGAERQPAGAGRRRQQAGHAHGAAAPEPARRRHHHCRLLILR*

Sequence

>CNT30673696
CAAAGCTATAGTTTGGTTTTGGCACAAAACTTGGGTGGATTCATAAGGGTAGCCGCTACTTAATAATAATAAGCTTTACATTATAAGGGGTTCCCGGCCG
GCCGGAAAGTCGCCGTCGTTGTTCGTTGTACAGTTCCTGCACGCACGCAGGCAGTGCCCAGTAACCAACCAATCACACACATAGAACATCATCCACACTC
CCAGCACAGCCCCATCTCCTGTCTCGTCTCATCCTCTTCTCTCACAATCATCTCAGCTCAAGGGTAGATCGTTCTGGGGATGATGATGTCGCCGATGTTG
TTGCCCAGGGGAGGAGCCGTCGAGGTGGGCGGGGCGGGGCTGGCCGGGCATCCACTCGGCGGACATGGTGACGCGGCCGGAGGTGGTGGCGTTGGCGCAG
AACGGCAGCCGGCCGGAGCGGGACGACGGCGCCAGCAGGCTGGGCACGCCCACGGCGCTGCAGCTCCGGAGCCCGCTCGACGACGCCATCACCATTGCCG
CTTGCTGATCCTGAGGTGACGGGGAGACGAGAGGAGGGAGGGAGGAC