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Detailed information on CNT30673662


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDM1|CB121_HORVU, E-value = 2e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30244663Setaria viridisAvena sativa49.4764.9588.49139forward
CNT30670281Setaria viridisTriticum dicoccoides56.9419.7587.5160forward
CNT30142107Setaria viridisLolium perenne25.628.3894.4472forward
CNT3037560Setaria viridisCucumis melo23.846.3986.5767forward
CNT30148497Setaria viridisBrachypodium distachyon29.1828.1895.1282forward
CNT30115974Setaria viridisOryza nivara19.5725.1196.3655forward

Expression of CNT30673662

Peptides detected in this lncRNA

>peptide 1 (62 aa)
VIGREYYPGEEPSRWAGRGWPGIHSADMVTRPERDDGASRLGTPTALQLRSPLDDAITIAAC*

Sequence

>CNT30673662
GGTGATTGGCCGTGAGTATTACCCAGGAGAGGAGCCGTCGAGGTGGGCGGGGCGGGGCTGGCCGGGCATCCACTCGGCGGACATGGTGACGCGGCCGGAG
CGGGACGACGGCGCCAGCAGGCTGGGCACGCCCACGGCGCTGCAGCTCCGGAGCCCGCTCGACGACGCCATCACCATTGCCGCTTGCTGATCCTGAGGTG
ACGGGGAGACGAGAGGAGGGAGGGAGGACAAGTGGCGTTTGAGAGCGGAGCAGAATCTGCGGCTGCTATTAAGAGCACGAG