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Detailed information on CNT30673657


BLAST search results

BLAST vs Swiss-Prot:
sp|P55313|CATA2_WHEAT, E-value = 2e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640164Setaria viridisNymphaea colorata24.92.949060forward
CNT30305192Setaria viridisTriticum aestivum40.6618.0894.998forward
CNT30668770Setaria viridisTriticum dicoccoides40.6612.7995.9298forward
CNT30475173Setaria viridisSaccharum spontaneum41.0813.3294.9599forward
CNT30688530Setaria viridisTriticum urartu40.2522.8893.8197forward
CNT30368538Setaria viridisSorghum bicolor57.6823.1792.09139forward
CNT30370393Setaria viridisOryza glumipatula30.7131.4994.5974forward
CNT30576697Setaria viridisOryza barthii30.7117.0594.5974forward

Expression of CNT30673657

Peptides detected in this lncRNA

>peptide 1 (79 aa)
LLSHPLLFIQCYNHSQHHTLHVASTSGLLRFLCLLSVPADQGVGVHTKTLHVPVVEWDANIIEEEGEIHRELLQRNPWHW

>peptide 2 (39 aa)
TTITSITLYSMLQPFPASHTSCCIHLRFAALFVLAFRPC*

>peptide 3 (42 aa)
YYHIHYSLFNVTTIPSITHFMLHPPPVCCAFCACFPSLLIKV*

Sequence

>CNT30673657
ACTACTATCACATCCATTACTCTTTATTCAATGTTACAACCATTCCCAGCATCACACACTTCATGTTGCATCCACCTCCGGTTTGCTGCGCTTTTTGTGC
TTGCTTTCCGTCCCTGCTGATCAAGGTGTAGGTGTTCACACCAAAACCCTCCATGTGCCTGTAGTTGAGTGGGATGCCAACATCATCGAAGAGGAAGGTG
AGATACATCGTGAGTTACTTCAAAGAAACCCTTGGCACTGG