CANTATAdb - search

Detailed information on CNT30673590

BLAST search results

BLAST vs Swiss-Prot:
sp|P69315|UBIQP_LINUS, E-value = 7e-140

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-125

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691368	Setaria viridis	Oryza sativa	70.65	26.26	91.8	573	forward
CNT30400381	Setaria viridis	Triticum turgidum	56.72	57.5	91.96	460	forward
CNT30349330	Setaria viridis	Eragrostis tef	56.23	29.42	91.45	456	forward
CNT30150301	Setaria viridis	Brachypodium distachyon	70.65	40.58	91.62	573	forward

Expression of CNT30673590

Peptides detected in this lncRNA

>peptide 1 (68 aa)
LHSSKCSQNTTRQHKTHIRRARLDHDTTTGHADNLHLRDKAGTRLVNPGMTAARQPQDLLATTETEHQ*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSKVMVLPVRVLTKICIPPRRRSTRWRVDSFCML*

>peptide 3 (52 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSKVMVLPVRVLTKICIPPRRRSTR*

>peptide 4 (37 aa)
CCTAASVHKTPPDNIRRTSDGHDSTMTQQQDTQTISI*

Sequence

>CNT30673590
TGCTGCACAGCAGCAAGTGTTCACAAAACACCACCAGACAACATAAGACGCACATCAGACGGGCACGACTCGACCATGACACAACAACAGGACACGCAGA
CAATCTCCATTTGAGAGACAAGGCAGGCACCAGACTTGTGAACCCAGGAATGACAGCAGCTCGACAGCCCCAAGACTTACTGGCCACCACGGAGACGGAG
CACCAGTAAGGGTCTTGACAAAGATCTGCATACCACCACGCAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGTATGTTGTAGTCAGCCAGGGTGCG
GCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCT
GAAGACTCCACCTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAGATCTGCATACCACCACGCAGGCGGAGCACAAGGTGAAGGGTCGACTCCT
TTTGGATATTGTAGTCGGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGAT
CTTGGCCTTCACGTTGTCGATGGTGTCAGAAGACTCCACCTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAGATCTGCATACCACCACGCAGG
CGGAGCACAAGGTGGAGAGTGGACTCCTTCTGTATGTTGTAGTCAGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGT
CCGGAGGAATG