Detailed information on CNT30673536


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 3e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30139060Setaria viridisLolium perenne66.535.5387.41135forward
CNT306891Setaria viridisZea mays53.6917.5284.4109forward
CNT3068379Setaria viridisLeersia perrieri26.118.6792.4553forward
CNT30604840Setaria viridisOryza punctata46.3126.9386.1794forward

Expression of CNT30673536

Peptides detected in this lncRNA

>peptide 1 (29 aa)
SNISCLALSCDLGLRVLLRSRAETFPDGI*

Sequence

>CNT30673536
ACTCCAACATCAGCTGTTTGGCCCTCTCCTGTGATTTGGGGCTCAGGGTCTTGTTAAGATCACGTGCAGAGACTTTCCCTGATGGCATCTGATAGTTACG
GAGCTCGAATCTCAGACAAGCATTGACCCAACGCAGGTCTTTTTTGTTTGGTAAACTGAGCTTTTTCACTGAGAAGAGCTTTTACCTCTTGAGATCATCG
TGT