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Detailed information on CNT30673480


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRN1|NHL2_ARATH, E-value = 4e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30545912Setaria viridisIpomoea triloba14.4235.9186.0879forward
CNT30462560Setaria viridisSaccharum spontaneum70.9947.9184.83389forward
CNT30101505Setaria viridisOryza rufipogon61.529.6187.54337forward
CNT30116529Setaria viridisOryza nivara55.6628.1187.54305forward

Expression of CNT30673480

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MAKFPSVCSFLNSAAVTSPWSGCWPWKPGVSLVEASVPW*

Sequence

>CNT30673480
CGATGTACAGCAACAAATAATCCTCCCACCAGTCTCACCAACAAATAATCCAAGACGAAGAACAGACAGAATCCATACTAGCTAGCAGCAGAATAATCCA
ACAACATCCTCTACCAGAGTTTGCAGTCGGTGGGCTGGAACGGCGATCCGTTGGCGGCTCCCGGCGCCGGGACGGAGAGCTTGCAGGTGATCTTAGCCTT
GGGTCCGGGGACCTTGAAGGCCCAGACCTTGACCCTGAGCTTGGCGTTGAGGCCGACGTTGATGGCGAAGTTCCCGTCGGTCTGCTCCTTCCTGAACTCG
GCGGCGGTGACGTCCCCCTGGAGCGGCTGCTGGCCGTGGAAGCCCGGGGTGAGCTTGGTGGAGGCCTCGGTGCCCTGGTAGAAGGAGTCGAGCGGGGCGT
ATCCGAAGCGCTGGTCCTTGTAGAGCGCGAGGGCCTCGACGTTGTCGTAGTAGAGGCCAACCCGCTTGTTGGGGTTGCGGACGGTGATGCCGACGGTGAG
GTTGTAGGCGAGGGAGGAGGACGATGGGGAAGGAATCCGATGGGATTT