Detailed information on CNT30673472


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 3e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555733Setaria viridisOryza glaberrima33.557.2492.23103forward
CNT30662078Setaria viridisTriticum dicoccoides60.9164.4888.77187forward

Expression of CNT30673472

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVRQTLRMVTSPAAPRAPAWPCTGVLRSGPVRAKGPTRR*

>peptide 2 (29 aa)
HLYTCSLLNQRPHRLPMHAHACREDVYLK*

>peptide 3 (70 aa)
MGGDAVHGEADAEDGDEPGGAQGARLAVHGRVAERAGEGEGAHEEVAVRKPDLDAAEQRAHGGAVGREVGE

Sequence

>CNT30673472
ACATTTATACACGTGCTCACTGCTCAATCAACGACCTCATCGCCTACCCATGCACGCACACGCATGTAGAGAGGACGTCTACTTGAAGTAGTATGGGAGG
CGACGCCGTACATGGTGAGGCAGACGCTGAGGATGGTGACGAGCCCGGCGGCGCCCAGGGCGCCCGCCTGGCCGTGCACGGGCGTGTTGCGGAGCGGGCC
GGTGAGGGCGAAGGGGCCCACGAGGAGGTAGCCGTGCGCAAGCCCGACCTCGATGCCGCGGAGCAGCGGGCTCACGGCGGTGCGGTAGGCCGGGAGGTTG
GAGAGGT