Detailed information on CNT30673415


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30190568Setaria viridisSecale cereale211.4710042reverse complement
CNT30293847Setaria viridisTriticum aestivum2112.1710042forward
CNT30222985Setaria viridisHordeum vulgare218.9710042forward
CNT30389287Setaria viridisTriticum turgidum217.8710042forward
CNT30438202Setaria viridisAegilops tauschii216.6110042forward
CNT30660836Setaria viridisTriticum dicoccoides216.8910042forward
CNT30683166Setaria viridisTriticum urartu218.8610042forward
CNT30349660Setaria viridisEragrostis tef26.513.5210053forward
CNT30595554Setaria viridisOryza meridionalis25.519.5498.0451forward
CNT30369283Setaria viridisOryza glumipatula25.513.1498.0451forward
CNT3099720Setaria viridisOryza rufipogon23.59.6797.8747forward
CNT30556918Setaria viridisPanicum hallii79.551.4685.53159forward

Expression of CNT30673415

Peptides detected in this lncRNA

>peptide 1 (56 aa)
SINHNFQSARSYLDAGLLLYNTFWGVLLPPRSCSMAAAPQLQLQQEQPQLVPHLQV*

Sequence

>CNT30673415
TCAATTAACCACAATTTTCAGTCGGCAAGATCTTATTTAGACGCTGGCCTGCTACTATATAATACGTTCTGGGGGGTTCTCCTTCCTCCTCGATCGTGCT
CCATGGCGGCGGCGCCTCAGTTGCAGCTGCAGCAGGAGCAGCCGCAGCTGGTGCCGCACTTGCAGGTGTAGTGCTTCTTGCGCTCTGCTTCGCTTGTGAT