Detailed information on CNT30673410


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221717Setaria viridisHordeum vulgare2521.8694.4454forward
CNT30385971Setaria viridisTriticum turgidum40.282086.2187forward
CNT30553585Setaria viridisOryza glaberrima20.374.6995.4544forward
CNT30101385Setaria viridisOryza rufipogon41.26.3286.5289forward
CNT30116506Setaria viridisOryza nivara36.575.6286.0879forward
CNT30604472Setaria viridisOryza punctata21.763.3191.4947forward

Expression of CNT30673410

Peptides detected in this lncRNA

>peptide 1 (70 aa)
EPAELRLKQVRLTSPTFPCGPLRLLILIMEVLNWSKNHQWLTASRVARTVMSAQETVAPHWAWTLARMSSM

>peptide 2 (70 aa)
GAGGVAPEAGAPDLADVSLWALEVAHLDHGGLELVEEPPVVDGVAGGEDGDVGAGDGGAALGVDLGADVLD

Sequence

>CNT30673410
TGGAGCCGGCGGAGTTGCGCCTGAAGCAGGTGCGCCTGACCTCGCCGACGTTTCCCTGTGGGCCCTTGAGGTTGCTCATCTTGATCATGGAGGTCTTGAA
CTGGTCGAAGAACCACCAGTGGTTGACGGCGTCGCGGGTGGCGAGGACGGTGATGTCGGCGCAGGAGACGGTGGCGCCGCACTGGGCGTGGACCTTGGCG
CGGATGTCCTCGATGA