Detailed information on CNT30673389


BLAST search results

BLAST vs Swiss-Prot:
sp|P20121|PSAH_PEA, E-value = 9e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520974Setaria viridisSetaria italica67.0634.87100287forward
CNT30367799Setaria viridisSorghum bicolor31.3120.5891.04134forward
CNT30582309Setaria viridisEchinochloa crusgalli29.6728.4196.85127forward
CNT30604128Setaria viridisOryza punctata29.2143.192125forward

Expression of CNT30673389

Peptides detected in this lncRNA

>peptide 1 (45 aa)
TIYIRTLVDNKADRLYEARSTNFNCICRSTISTSIKRGSDRISTG*

>peptide 2 (35 aa)
QLSIYELWLITKPTGCTRHAAPILIVYAGVQYQHR*

Sequence

>CNT30673389
CAACTATCTATATACGAACTTTGGTTGATAACAAAGCCGACAGGCTGTACGAGGCACGCAGCACCAATTTTAATTGTATATGCCGGAGTACAATATCAAC
ATCGATAAAAAGAGGCAGCGATCGAATATCAACAGGATAACAGGCAGAGATCCATGGTGATGATCGGAGCTAGCAGTACAAGCAAAGCTAGTAGGCGAAT
GGAGGAGGATCGGAGGAGCAACTGAACTTAGATCTTGCCGCGCGGGCCCGGCACCGGCGGCTGCTGCGGCCCCTTCTTGATCGGCAGGAGGTCCCACTGC
CCGGTGGTGTTGCCGATGTCGTCGAGGTCGAAGTAGACGCTCTTGTCGCCGTTACTACCGGTAGTGTCCAAGTGCGTACGTGCGCAAACTTAATTCGGCG
GATCGTGCTAAGGATCCGAGACGTGTGT