Detailed information on CNT30673377


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 7e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597062Setaria viridisOryza meridionalis64.5536.9191.13406forward

Expression of CNT30673377

Peptides detected in this lncRNA

>peptide 1 (41 aa)
TIQMIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

>peptide 2 (84 aa)
MHTLSNIRGLLLNVHEHLAVVSVKPDICRHETDVAASVPDNLLVVDVGLGGDLTKDHDHVSLGAGLASNLAVGVLSKASIKHSI*

>peptide 3 (46 aa)
MGTIAPPSLRYSTVTWVFPSVAYPNMCPWSPAPISSGRFVKWPCTP*

>peptide 4 (33 aa)
NTNDSKGQIKNHNTEATKHDKRSRPKASSQRAP*

>peptide 5 (30 aa)
MTMLVLVQVSQATLLSGSSARQASSTASETW

>peptide 6 (31 aa)
MFTSTLQWSASSPTSADTKPMLRQVSLTIFS*

Sequence

>CNT30673377
ACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACCAAACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCC
TTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGGTAG
CGCCCGTTGCCGCCTTTCTTGAGGACAGTGTGGACACGGATGGGGACCATCGCACCACCCTCATTGCGGTACTCGACAGTCACCTGGGTCTTCCCATCAG
TTGCATACCCAAACATGTGTCCCTGGTCACCAGCTCCGATCTCCTCAGGGCGCTTTGTGAAGTGGCCATGCACACCCTGAGCAATATCAGGGGACTGCTG
CTCAATGTTCACGAGCACCTTGCAGTGGTCAGCGTCAAGCCCGACATCTGCCGACACGAAACCGATGTTGCGGCAAGTGTCCCTGACAATCTTCTCGTAG
TCGACGTTGGCCTTGGTGGTGATCTCACCAAAGACCATGACCATGTTAGTCTTGGTGCAGGTCTCGCAAGCAACCTTGCTGTCGGGGTCCTCAGCAAGGC
AAGCATCAAGCACAGCATCTGAGACCTGG