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Detailed information on CNT30673342


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT007048, E-value = 7e-118

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727588Setaria viridisCorchorus capsularis53.7137.1387.78499forward
CNT30203418Setaria viridisHelianthus annuus31.9772.6285.19297forward

Expression of CNT30673342

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSRTGA*

>peptide 2 (52 aa)
MMMTWEVKLAASLAGSSLELEATKPRLRSLTATFFTLKPTLSPGRASWRASW*

>peptide 3 (29 aa)
MVTSIPGLMIPVSTRPTGTVPIPPILYTS*

Sequence

>CNT30673342
TCTCAGGTAATTTAAGTTTTGCCAAATCCAAATATAAAAACTGTATGTAAACATCAAACAGACCGAGGACACATTGCCAGCTGAGATTAATAGTTCACGA
GATAACAGCAATGGCCATAGACAAAACTTAAGTGATATTATAGCATCTAGGCATGCCAAAAGCAGAAGTGGAATCAACCACCAGACACATCATTTCTTCT
TGGCTGCAGCCTTAGTCACCTTGGCGCCCGTTGGGTCCTTCTTCTCCACGCTCTTGATGACTCCAACAGCAACCGTTTGCCTCATGTCACGGACAGCAAA
ACGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACCACCATGGGCTTGGTGGGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGAACTTGGGC
TCCTTCTCAAGCTCCTTACCGGATCGTCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGGACTGGGGCGT
AACCATTGCCGATCTGGCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTGGCAGCTTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACAAA
ACCACGCTTGAGATCCTTAACAGCAACGTTCTTCACGTTGAAGCCAACGTTGTCACCAGGAAGGGCCTCCTGGAGAGCCTCATGGTGACAAGCATACCAG
GCTTGATGATACCGGTCTCAACACGGCCAACAGGGACGGTTCCAATACCACCGATCTTGTACACATCCTGAAGGGGAAGACGCAGGGTCAAGGTTGGTGG
ACCTCTCAATCATGTTGTCACCCTCAAAACCGGAGATGGGGACGAAGGCAATCTTGTCAGGGTTGTAACCCACCTTCTTCAGGTAGGAGGAGACTTCCTT
CACAATCTCATCATAACGGGCCTTGGAGT