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Detailed information on CNT30673315


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY5|METE1_ORYSJ, E-value = 2e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30504596Setaria viridisNicotiana attenuata3636.5984225forward
CNT30282Setaria viridisZea mays24.325093.42152forward

Expression of CNT30673315

Peptides detected in this lncRNA

>peptide 1 (42 aa)
HTSELQMKHCRHPLGFTIQVHGKLCLKTTKFTKTNTGMSRVR*

>peptide 2 (59 aa)
MSLAAETMLVRAGLTSVYLRVLRPQSGFTQRMLVSSTASILLMRSAISSVDGILGEWMS*

>peptide 3 (32 aa)
MPAPFSSDREFSMVITSASMLMMEWMMSLKLE*

>peptide 4 (34 aa)
THLRVADETLQTSTRFYNTSTRETLPQNHQIHED*

Sequence

>CNT30673315
AACACACCTCAGAGTTGCAGATGAAACACTGCAGACATCCACTCGGTTTTACAATACAAGTACACGGGAAACTTTGCCTCAAAACCACCAAATTCACGAA
GACTAACACAGGTATGAGCAGGGTGCGATAATCGTGCCAAGAAAAATACTAATCTAACCCACAGACGAGCGGATACACGGTCCATATTATTCAAGACAAA
TGGCTTCTTTGATGGCACCCTCCTTGTAATTAAACGAAAAGCCACTGCAGGGACGGTTCTCACTTGGCGCTGGCGAGCTGGGTGCGGATGAGCTTGGCGG
CAGAGACCATGTTGGTTAGGGCGGGCTTGACCTCCGTGTACTTGCGGGTCTTGAGACCACAGTCAGGGTTCACCCAGAGGATGTTGGTTTCGAGCACCGC
AAGCATCTTGTTGATGCGGTCGGCAATCTCCTCAGTGGATGGGATCCTGGGGGAGTGGATGTCGTAGACACCAGGGCCAATGCCGGCGCCCTTCTCATCG
GACCGTGAGTTCTCAATGGTGATCACATCAGCGTCCATGTTGATGATGGAGTGGATGATGTCGTTGAAGTTGGAGTAGCACATGTGGCCTTCGAGAGCAA
CAAGTATGAGACTGGTCCAGTAAGT