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Detailed information on CNT30673293


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 2e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521030Setaria viridisSetaria italica92.5463.1498.04459forward
CNT30582394Setaria viridisEchinochloa crusgalli74.899.4692.99371forward

Expression of CNT30673293

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MPPKKKPPVNLAQPSAVCSLSASFLRPVSVSVGAVDGSPSAKGPTRR*

>peptide 2 (44 aa)
LHPSKKSTVQVPSYLKYIYTRAHCSINDLIAYPCTHTHVERTST*

Sequence

>CNT30673293
ACTCCATCCAAGTAAGAAATCAACAGTTCAAGTTCCAAGTTACTTGAAGTACATTTATACACGTGCTCACTGCTCAATCAACGACCTCATCGCCTACCCA
TGCACGCACACGCATGTAGAGAGGACGTCTACTTGAAGTAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAGGCCCAGACCACGCCGGAGATGCCGCC
GAAGAAGAAGCCTCCGGTGAACTTGGCCCAGCCGTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCGGTGAGCGTGAGCGTGGGCGCCGTGGAC
GGGTCGCCCTCGGCGAAGGGGCCCACGAGGAGGTAGCCGTGCGCAAGCCCGACCTCGATGCCGCGGAGCAGCGGGCTCACGGCGGTGCGGTAGGCCGGGA
GGTTGGAGAGGTACCAGGCGATGAGCGGGCTGGAGGTGATGGGCGTCTCCAGGCTGCCGATGAAGGGGTCGCCGTTGATGGGCTGCACCACCTGGT