Detailed information on CNT30673277


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY4|METE2_ORYSJ, E-value = 5e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404178Setaria viridisBeta vulgaris31.7218.7588.8972forward
CNT30605533Setaria viridisGossypium raimondii29.965.4186.7668reverse complement
CNT30689644Setaria viridisTriticum urartu63.449.8889.58144forward
CNT30322845Setaria viridisAsparagus officinalis80.1813.6985.71182forward
CNT30333334Setaria viridisCynara cardunculus80.1822.8184.62182forward

Expression of CNT30673277

Peptides detected in this lncRNA

>peptide 1 (48 aa)
RLSLLVFINSLVGRVVGVKPLGHLHSRDSGIAPSHREVGVKPNLSSGP*

Sequence

>CNT30673277
CGCCTTAGCCTCCTTGTATTCATTAACAGCCTTGTGGGAAGAGTAGTTGGTGTCAAACCACTTGGTCATCTCCATAGCAGGGACAGTGGCATTGCCCCTA
GCCATCGAGAAGTAGGTGTCAAACCCAATCTCTCCTCCGGTCCATGAGTAGCGCTCTGGGACAGCGCCGAGCATGGCGGTGGTGTCAAGGACCTGGTCAT
AGTAGGAGAAGGTGTTGCTGGGGATGT