Detailed information on CNT30673262


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693116Setaria viridisOryza sativa26.5511.9192.5594forward
CNT30658921Setaria viridisTriticum dicoccoides30.7916.0592.66109forward

Expression of CNT30673262

Peptides detected in this lncRNA

>peptide 1 (92 aa)
KSNNEAKAPLLDGDTSVHRIGTLLQARKCQQSQAREEEVAQVVDAHAHLVPVGGERRRPRRRAVDGGVALLGDGESGREESSLQSHGGRFGA*

>peptide 2 (64 aa)
TNQTMKQKLLCSTETRASTVLARSSKLESVSNLRRARRKWPRWLTPTLISYPSAVNVGVRAVGR*

>peptide 3 (29 aa)
MAALPFLGTERVEGRRAACRAMADGLERS*

Sequence

>CNT30673262
ACAAATCAAACAATGAAGCAAAAGCTCCTCTGCTCGACGGAGACACGAGCGTCCACCGTATTGGCACGCTCCTCCAAGCTAGAAAGTGTCAGCAATCTCA
GGCGCGCGAGGAGGAAGTGGCCCAGGTGGTTGACGCCCACGCTCATCTCGTACCCGTCGGCGGTGAACGTCGGCGTCCGCGCCGTCGGGCGGTAGATGGC
GGCGTTGCCCTTCTTGGGGACGGAGAGAGTGGAAGGGAGGAGAGCAGCCTGCAGAGCCATGGCGGACGGTTTGGAGCGTAGCTAAGCTGAGTTCAGCTGA
GCGACAGCGAGACGCGCTGTTGTTTGCGGCGCGGTGACTGTGCTCGGAGGTGGT