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Detailed information on CNT30673246


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 4e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520889Setaria viridisSetaria italica79.7993.9593.27683forward

Expression of CNT30673246

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MNNVTARIPVSRSIDYITCMHLILPPLLTKPVLLMRRLTGSPAVDLSPWNGATEVAEEAITVGAMAY*

>peptide 2 (34 aa)
MFSKPMVALLMGTHARPIVTEAFRWGKMEIIKRC*

>peptide 3 (34 aa)
CYNVPTNWQSSGTLSYEYDRCVYIRVNISLCAKV*

Sequence

>CNT30673246
TGTTATAATGTTCCAACGAATTGGCAATCTAGTGGTACATTGTCGTATGAATATGATCGCTGTGTATACATTCGTGTAAATATATCACTATGTGCAAAGG
TATAGCCGGAGCTATGTACCATGCATTCACATGTTTAGCAAGCCAATGGTAGCATTGCTCATGGGCACGCATGCTCGCCCAATAGTTACAGAAGCGTTCA
GATGGGGAAAAATGGAGATAATCAAGCGGTGTTGAACTGAGACGGACAGGTATTTAAGCTTTTTATTTGGCGCCGCCGGTCTACTCGCTGCCCGGGGGCT
TGTAGGCGATGAACATGACGCACTGCACCTGCTTGATGTTGTCGAAGCCGATGACACGGATGTAACAGTCAGGGTAGGCCTTCTTGCACTCCTCGAGCTC
AGCGTACACCTGGGTGGCCTCGGTGCAGGGGATCCAGTTGTTCCGGATCAGGTACTCGACCTGCTTCAGGAGCTGGTCGGTTGAGAGAGGTGGCAGGTAG
GAGAGGGTCTCGAACTTCTTGTTGCCCTCCGCCGGCCACACCTGAGCAACGACACTCTCATATCAGTTCCTAAACTTCCTATTGAGTTGTATTATTTATA
TGAACAACGTAACAGCAAGAATTCCAGTGTCTAGATCGATCGATTATATTACCTGCATGCACCTGATCCTTCCGCCGTTGCTGACGAAGCCGGTGCTACT
GATGCGGCGGCTGACGGGGAGTCCGGCGGTGGACTTGAGCCCCTGGAATGGAGCCACGGAGGTGGCCGAGGAGGCCATCACGGTCGGCGCCATGGCTTAC
TAGCTAGTGCTAGTATACGCTTACTAGTACTGTATTTACGAAGGAGAAGAAGAGGC