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Detailed information on CNT30673222


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY4|METE2_ORYSJ, E-value = 1e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513228Setaria viridisJuglans regia40.2532.6585.04254forward
CNT30375849Setaria viridisArabidopsis thaliana47.726.8884.05301forward
CNT30403349Setaria viridisBeta vulgaris35.564.3787.05224forward
CNT30249492Setaria viridisAvena sativa24.0944.5789.47152forward
CNT30136078Setaria viridisLolium perenne34.7184.5688.13219forward
CNT30650401Setaria viridisRosa chinensis48.8134.9685.39308forward
CNT30211728Setaria viridisHelianthus annuus30.7473.4882.99194forward
CNT30689645Setaria viridisTriticum urartu14.120.9497.7589forward
CNT30721247Setaria viridisTriticum spelta47.0756.5791.25297forward
CNT30367469Setaria viridisSorghum bicolor48.3443.7695.08305forward
CNT3027382Setaria viridisPopulus trichocarpa39.6251.6585.2250forward
CNT30148668Setaria viridisBrachypodium distachyon33.9170.1688.79214forward
CNT30118099Setaria viridisOryza nivara45.6435.3492.71288forward

Expression of CNT30673222

Peptides detected in this lncRNA

>peptide 1 (50 aa)
WLPDNFLAQRSLIRAVTHLRVADETLQTSTRFYNTSTRETLPQNHQIHED*

>peptide 2 (43 aa)
MPAPYFTPSRKTERSFSSDREFSMVITSASMLMMEWMMSLKLE*

>peptide 3 (38 aa)
MGSWGSGCRRHQGQCRRRTSHPHGRRRGASHRTVSSQW*

>peptide 4 (36 aa)
MKHCRHPLGFTIQVHGKLCLKTTKFTKTNTGMSRVR*

Sequence

>CNT30673222
TGGCTTCCAGACAATTTTCTTGCCCAAAGATCATTAATACGAGCCGTAACACACCTCAGAGTTGCAGATGAAACACTGCAGACATCCACTCGGTTTTACA
ATACAAGTACACGGGAAACTTTGCCTCAAAACCACCAAATTCACGAAGACTAACACAGGTATGAGCAGGGTGCGATAATCGTGCCAAGAAAAATACTAAT
CTAACCCACAGACGAGCGGATACACGGTCCATATTATTCAAGACAAATGGCTTCTTTGATGGCACCCTCCTTGTAATTAAACGAAAAGCCACTGCAGGGA
CGGTTCTCACTTGGCGCTGGGCGGGCTTGACCTCCGTGTACTTGCGGGTCTTGAGACCACAGTCAGGGTTCACCCAGAGGATGTTGGTTTCGAGCACCGC
AAGCATCTTGTTGATGCGGTCGGCAATCTCCTCAGTGGATGGGATCCTGGGGGAGTGGATGTCGTAGACACCAGGGCCAATGCCGGCGCCGTACTTCACA
CCCTCACGGAAGACGGAGAGGAGCTTCTCATCGGACCGTGAGTTCTCAATGGTGATCACATCAGCGTCCATGTTGATGATGGAGTGGATGATGTCGTTGA
AGTTGGAGTAGCACATGTGGGTGTGGATCTG