Detailed information on CNT30673219


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 5e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549659Setaria viridisIpomoea triloba28.4441.4582.54126forward
CNT30703567Setaria viridisQuercus lobata24.8321.7890110forward
CNT30196946Setaria viridisPisum sativum33.4120.6781.08148forward
CNT3086297Setaria viridisVigna radiata37.714.3687.43167forward
CNT3014450Setaria viridisZea mays54.8549.2988.48243forward

Expression of CNT30673219

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSPEMLANGAGFLGGVDRSEDGDSRCDWCLEW

Sequence

>CNT30673219
ACAACAAGCTTGATTTCTAATATCAGATCATTTCATTACTGTCTCATGATTCAGATAAACCTACTACAGCCAGATGTGAGCTAAACAAGCGAGTCTGAAA
CTTTCTTAACCGCAAGACTTGTGAGCACGGCCAGACAACGTCGGAGCTGCAGGAGGGAGACAGCAGGGGACGGGCGCATCAGCCTCTAGCCGCCGAAGCC
GTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCGCGGATG
ACGTTCTCGAGGAAGATCTTGAGTACGCCGCGGGTCTCCTCGTAGATGAGCCCGGAGATGCTTGCCAACGGAGCTGGATTCCTCGGAGGAGTGGATCGAA
GTGAAGATGGGGATTCAAGGTGTGATTGGTGCTTGGAGTGGGG