Detailed information on CNT30673197


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021623Setaria viridisCitrullus lanatus21.258.2585.71112forward
CNT30730016Setaria viridisCorchorus capsularis21.2516.9282.14112forward
CNT30344815Setaria viridisEragrostis tef40.6149.7793.93214forward
CNT30578384Setaria viridisOryza barthii26.3835.4697.12139forward
CNT30112090Setaria viridisFicus carica22.585.8188.24119forward

Expression of CNT30673197

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MPPKKKPPVNLAQPSAVCSLSASFLRPVSVSVGAPDLDAAEQRAHGGAVAISTSACLSRTGLFLPAKW*

Sequence

>CNT30673197
ACAAATACAACACCTAGTCATTAATTTTATCCCCAAGTAAATTAACTCCATCCAAGTAAGAAATCAACAGTTCAAGTTCCAAGTTACTTGAAGTACATTT
ATACACGTGCTCACTGCTCAATCAACGACCTCATCGCCTACCCATGCACGCACACGCATGTAGAGAGGACGTCTACTTGAAGTAGTATGGGAGGTCGAGC
ACGTAGAGGAGGAAGTAGGCCCAGACCACGCCGGAGATGCCGCCGAAGAAGAAGCCTCCGGTGAACTTGGCCCAGCCGTCGGCGGTCTGCAGCTTGTCGG
CCTCCTTCTTGCGGCCGGTGAGCGTGAGCGTGGGCGCCCCCGACCTCGATGCCGCGGAGCAGCGGGCTCACGGCGGTGCGGTAGCCATCTCGACCTCTGC
CTGTCTCTCACGAACAGGGCTCTTCCTTCCTGCAAAATGGTAGAAGAGGTCTCCTTGTATCGGCCCAATTAAAGTTTGTGATCTTTAGATCCTGCAGGGG
GTGTGTGAGAAGATCTGTGGCGTGTTT