Detailed information on CNT30673182


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 6e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30218533Setaria viridisKalanchoe fedtschenkoi24.5221.9285.96114forward
CNT30369885Setaria viridisOryza glumipatula20.6522.1792.7196forward
CNT30483063Setaria viridisChara braunii24.7350.8887.83115forward
CNT30645213Setaria viridisCannabis sativa28.8261.7590.3134forward
CNT30148504Setaria viridisBrachypodium distachyon26.4547.8691.06123forward
CNT30585568Setaria viridisEchinochloa crusgalli21.5119.4992100forward

Expression of CNT30673182

Peptides detected in this lncRNA

>peptide 1 (72 aa)
SNGHRQNLSDIIASRHAKSRSGINHQTHHFFLAAALVTLAPVGSFFSTLLMTPTATVCLMSRTAKRPRGGYQ*

Sequence

>CNT30673182
AGCAATGGCCATAGACAAAACTTAAGTGATATTATAGCATCTAGGCATGCCAAAAGCAGAAGTGGAATCAACCACCAGACACATCATTTCTTCTTGGCTG
CAGCCTTAGTCACCTTGGCGCCCGTTGGGTCCTTCTTCTCCACGCTCTTGATGACTCCAACAGCAACCGTTTGCCTCATGTCACGGACAGCAAAACGACC
AAGAGGAGGGTACCAGTAATCATGTTCTTGATGAAGTCACGGTGTCCAGGGGCATCAATGACTGTGCAGTAGTACTTGGTGGACCGCTTGTTCATCTCAG
CGGCCTCCTTCTCGAACCTCTCGATCACACGCTTGTCGATACCTCCAAGCTTGTAGATCAGGTGACCGGTGGTGGTCGACTTGCCGGAGTCGACGTGGCC
AATGACCACGATGTTGATGTGGGACTTCTCCTTACCCATGGTTGCAGGTGAGGCTTAAACTGCTG