Detailed information on CNT30673169


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 2e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520857Setaria viridisSetaria italica100.7840.8997.93386forward
CNT30639966Setaria viridisNymphaea colorata39.4310.0685.43151forward
CNT30533956Setaria viridisEucalyptus grandis46.4825.582.02178forward
CNT30629841Setaria viridisVigna unguiculata50.6533.1682.47194forward
CNT30222283Setaria viridisHordeum vulgare34.231.1992.37131forward
CNT30564216Setaria viridisActinidia chinensis31.8554.7187.7122forward
CNT3084712Setaria viridisVigna radiata34.246.2982.44131forward
CNT30129085Setaria viridisCorymbia citriodora46.4816.983.71178forward
CNT30597198Setaria viridisOryza meridionalis24.87.0994.7495forward

Expression of CNT30673169

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSGLEVMGVSRLPMKGSPLMGCTTWYVVCS

>peptide 2 (42 aa)
MGGRARRRGPRGGSRAQARPRCRGAAGSRRCGRPGGWRGTRR*

Sequence

>CNT30673169
CATTAATTTTATCCCCAAGTAAATTAACTCCATCCAAGTAAGAAATCAACAGTTCAAGTTCCAAGTTACTTGAAGTACATTTATACACGTGCTCACTGCT
CAATCAACGACCTCATCGCCTACCCATGCACGCACACGCATGTAGAGAGGACGTCTACTTGAAGTAGTATGGGAGGTCGAGCACGGCGAAGGGGCCCACG
AGGAGGTAGCCGTGCGCAAGCCCGACCTCGATGCCGCGGAGCAGCGGGCTCACGGCGGTGCGGTAGGCCGGGAGGTTGGAGAGGTACCAGGCGATGAGCG
GGCTGGAGGTGATGGGCGTCTCCAGGCTGCCGATGAAGGGGTCGCCGTTGATGGGCTGCACCACCTGGTACGTTGTCTGCTCA