Detailed information on CNT30672972


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QVG9|CLPC2_ORYSJ, E-value = 1e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30272384Setaria viridisChenopodium quinoa87.5618.4383.76197forward
CNT30404662Setaria viridisBeta vulgaris72.8920.9782.32164forward
CNT30709232Setaria viridisGlycine max75.5622.7982.94170forward
CNT30393350Setaria viridisTriticum turgidum89.7820.1887.13202forward
CNT30144776Setaria viridisMedicago truncatula75.5612.9580.59170forward
CNT30311914Setaria viridisCamelina sativa56.8920.7181.25128forward
CNT30685460Setaria viridisTriticum urartu89.7842.6287.13202forward
CNT3053264Setaria viridisAmborella trichopoda30.2210.8692.6568forward
CNT30116632Setaria viridisOryza nivara88.8952.2283.5200forward

Expression of CNT30672972

Peptides detected in this lncRNA

>peptide 1 (73 aa)
CFISSMTRSKPILRPPFSMTLLPTFEVMIRRVFLKSTVLPLLSVNLPSSKIWSIMLKTSGCAFSISSKSTTVYG

>peptide 2 (29 aa)
LLHLLNDEVKTNLTPTLLNDTAPDVRGHD*

Sequence

>CNT30672972
ACTGCTTCATCTCCTCAATGACGAGGTCAAAACCAATCTTACGCCCACCCTTCTCAATGACACTGCTCCCGACGTTCGAGGTCATGATTAGGAGGGTGTT
CTTGAAGTCCACTGTTCTTCCCTTGCTGTCGGTCAACCTCCCGTCTTCCAAAATCTGGAGCATCATGTTGAAGACATCAGGGTGTGCCTTCTCAATCTCA
TCAAAGAGCACAACTGTGTATGGGC