CANTATAdb - search

Detailed information on CNT30672909

BLAST search results

BLAST vs Swiss-Prot:
sp|P05348|RBS_MAIZE, E-value = 6e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30180865	Setaria viridis	Secale cereale	48.8	48.8	82.32	345	forward
CNT30221752	Setaria viridis	Hordeum vulgare	48.66	51.42	82.56	344	forward
CNT30555612	Setaria viridis	Oryza glaberrima	49.65	33.59	84.62	351	forward
CNT30136970	Setaria viridis	Lolium perenne	50.92	56.34	80.83	360	forward
CNT30351770	Setaria viridis	Eragrostis tef	48.23	34.94	83.28	341	forward
CNT30150944	Setaria viridis	Brachypodium distachyon	49.22	52.1	82.18	348	forward
CNT30104669	Setaria viridis	Oryza rufipogon	49.65	42.34	83.76	351	forward

Expression of CNT30672909

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFSKPMVALLMGTHARPIVTEAFRWGKMEIIKRC*

Sequence

>CNT30672909
TACATTGTCGTATGAATATGATCGCTGTGTATACATTCGTGTAAATATATCACTATGTGCAAAGGTATAGCCGGAGCTATGTACCATGCATTCACATGTT
TAGCAAGCCAATGGTAGCATTGCTCATGGGCACGCATGCTCGCCCAATAGTTACAGAAGCGTTCAGATGGGGAAAAATGGAGATAATCAAGCGGTGTTGA
ACTGAGACGGACAGGTATTTAAGCTTTTTATTTGGCGCCGCCGGTCTACTCGCTGCCCGGGGGCTTGTAGGCGATGAACATGACGCACTGCACCTGCTTG
ATGTTGTCGAAGCCGATGACACGGATGTAACAGTCAGGGTAGGCCTTCTTGCACTCCTCGAGCTCAGCGTACACCTGGGTGGCCTCGGTGCAGCCGAACA
TGGGCAGCTTCCACATGGTCCAGTAGCGCCCGTCGTAGTAACAGGGAGACCTGCTGTTCTCACGAAAGACGAACCCGACCTTGCTGAACTCGAGGCAGGG
GATCCAGTTGTTCCGGATCAGGTACTCGACCTGCTTCAGGAGCTGGTCGGTTGAGAGAGGTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGTTGCCCTCC
GCCGGCCATCACGGTCGGCGCCATGGCTTACTAGCTAGTGCTAGTATACGCTTACTAGTACTGTATTTACGAAGGAGAAGAAGAGGCAGTCTTGCTTGAG
AGGCTCC