Detailed information on CNT30672906


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 1e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30508528Setaria viridisSolanum lycopersicum15.926.5983.33138forward
CNT30310308Setaria viridisCamelina sativa20.5177.0682.02178forward
CNT3017355Setaria viridisZea mays37.2158.387.93323forward
CNT3066706Setaria viridisLeersia perrieri24.1961.7686.19210forward

Expression of CNT30672906

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMIMPGLKSKFSLIILRISLSGIVPVPYVSTNTERGSGTPMA*

>peptide 2 (40 aa)
YHLLGQYNTNDSKGQIKNHNTEATKHDKRSRPKASSQRAP*

>peptide 3 (81 aa)
MRSTDDKATRWVKVEDGLLVKPDICRHETDVAASVPDNLLVVDVGLGGDLTKDHDHVSLGAGLASNLAVGVLSKASIKHSI*

>peptide 4 (53 aa)
MTMLVLVQVSQATLLSGSSARQASSTASETWSQSLSGCPSFTDSEAGWMRMRW*

>peptide 5 (38 aa)
MIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

>peptide 6 (36 aa)
MTKRPDGLRWKMVFSSSPTSADTKPMLRQVSLTIFS*

Sequence

>CNT30672906
GTACCACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACCAAACATGATAAGCGCAGCAGACCAAAA
GCTTCTTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGAAGTGACCGT
AGGCAGCTGTCTTGAGGTAGCGCCCGTTGATGATGATCATGCCAGGCCTGAAGTCGAAGTTCTCCTTAATAATCTTGAGGATCTCCTTGTCGGGGATCGT
GCCAGTGCCATATGTGTCAACAAACACGGAGAGGGGCTCAGGCACACCGATGGCATAGGAGACCTGGACGATGGCGCGGCGAGCAAGGCCATTAGCGACA
ATGCTCTTGGCAGCTTGCCTGGCAATGTAGGCTCCACTGCGGTCAACCTTGGTGTCAATGATGATCTTCCGGCCAGTGAGACCAGCATCACCATGAGGTC
CACCGATGACAAAGCGACCAGATGGGTTAAGGTGGAAGATGGTCTTCTCGTCAAGCCCGACATCTGCCGACACGAAACCGATGTTGCGGCAAGTGTCCCT
GACAATCTTCTCGTAGTCGACGTTGGCCTTGGTGGTGATCTCACCAAAGACCATGACCATGTTAGTCTTGGTGCAGGTCTCGCAAGCAACCTTGCTGTCG
GGGTCCTCAGCAAGGCAAGCATCAAGCACAGCATCTGAGACCTGGTCGCAGAGCTTGTCAGGGTGTCCCTCATTCACGGACTCCGAGGCGGGGTGGATGA
GGATGAGATGGTAACAAGTTGGGGAGTGCTCGTCTCAGATCCGACCCGGCCGCAGCGCACGCCGAGCT