« Back to Setaria viridis search


Detailed information on CNT30672898


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30248540Setaria viridisAvena sativa3026.5390.38156forward
CNT30116451Setaria viridisOryza nivara34.0416.0992.09177forward

Expression of CNT30672898

Peptides detected in this lncRNA

>peptide 1 (32 aa)
TIDECILVAVSMKWQNKRVIHGSDRLICAYPW*

>peptide 2 (72 aa)
MRTRTPAKTRREMRMLHRQLKSPQARHLQGQQRHETARLADPIFFFFFFFLLLCSCCALGIGRRTMGKESDGI

Sequence

>CNT30672898
ACGATAGATGAATGTATACTAGTAGCAGTATCAATGAAATGGCAAAACAAAAGAGTCATCCATGGATCGGATAGGCTAATATGTGCATATCCATGGTAGA
GCAGCCGGCGATGTACAGCAACAAATAATCCTCCCACCAGTCTCACCAACAAATAATCCAAGACGAAGAACAGACAGAATCCATACTAGCTAGCAGCAGA
ATAATCCAACAACATCCTCTACCAGAGTTTGCAGTCGGTGGCGAGGGAGGCGGAGTCGACGGTGGCGGCGATCATGTGGGGGCGGAAGATGAGGTAGAGG
ATGAGGACGAGGACGCCGGCGAAGACGAGGAGGGAGATGAGGATGCTGCACAGGCAGCTGAAGAGCCCGCAGGCCAGGCACTTGCAGGGGCAGCAGAGGC
ACGAGACGGCGCGGCTCGCGGACCCCATCTTCTTCTTCTTCTTCTTCTTCTTGCTGCTCTGCTCTTGTTGTGCTCTCGGGATTGGGAGGAGGACGATGGG
GAAGGAATCCGATGGGATTT