Detailed information on CNT30672859


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221053Setaria viridisHordeum vulgare34.5310.7290.9177forward
CNT30437365Setaria viridisAegilops tauschii34.5322.3890.9177forward
CNT30135654Setaria viridisLolium perenne19.2820.2895.3543forward
CNT3067646Setaria viridisLeersia perrieri20.1821.8495.5645forward
CNT30351340Setaria viridisEragrostis tef29.62393.9466reverse complement
CNT30104481Setaria viridisOryza rufipogon29.68.1992.4266forward
CNT30117977Setaria viridisOryza nivara52.0212.2289.66116forward

Expression of CNT30672859

Peptides detected in this lncRNA

>peptide 1 (53 aa)
LHAPDPSAVADVAEAGAAGAAADGESGGGGGHRGGGHGLLETKLANKTEASVA*

>peptide 2 (40 aa)
TCMHLILPPLLTLPKPELLERRLTGSLAVAAAIAVGAMAY*

Sequence

>CNT30672859
ACCTGCATGCACCTGATCCTTCCGCCGTTGCTGACGTTGCCGAAGCCGGAGCTGCTGGAGCGGCGGCTGACGGGGAGTCTGGCGGTGGCGGCGGCCATCG
CGGTGGGGGCCATGGCTTACTAGAGACCAAGCTAGCGAATAAAACTGAAGCCTCAGTAGCTTGAGTTGAGGCTTGTGGCAAGGGGCACATATAACCAAAC
CAGAGGGGATGTCAGGATATGGC