« Back to Setaria viridis search


Detailed information on CNT30672821


BLAST search results

BLAST vs Swiss-Prot:
sp|P05348|RBS_MAIZE, E-value = 7e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555725Setaria viridisOryza glaberrima38.7439.4685.03294forward
CNT30720492Setaria viridisTriticum spelta36.2354.6781.82275forward
CNT30365555Setaria viridisSorghum bicolor39.2661.1981.88298forward
CNT30597241Setaria viridisOryza meridionalis38.7433.7583.67294forward
CNT30578612Setaria viridisOryza barthii38.7425.9985.03294forward
CNT30118025Setaria viridisOryza nivara38.7425.4184.01294forward
CNT30551876Setaria viridisOryza brachyantha37.9433.4984.38288forward

Expression of CNT30672821

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFSKPMVALLMGTHARPIVTEAFRWGKMEIIKRC*

Sequence

>CNT30672821
CACTTTTTCCTTGTATTATCATATGATCATTTACGTAAGTAAAACAACCATGTTATAATGTTCCAACGAATTGGCAATCTAGTGGTACATTGTCGTATGA
ATATGATCGCTGTGTATACATTCGTGTAAATATATCACTATGTGCAAAGGTATAGCCGGAGCTATGTACCATGCATTCACATGTTTAGCAAGCCAATGGT
AGCATTGCTCATGGGCACGCATGCTCGCCCAATAGTTACAGAAGCGTTCAGATGGGGAAAAATGGAGATAATCAAGCGGTGTTGAACTGAGACGGACAGG
TATTTAAGCTTTTTATTTGGCGCCGCCGGTCTACTCGCTGCCCGGGGGCTTGTAGGCGATGAACATGACGCACTGCACCTGCTTGATGTTGTCGAAGCCG
ATGACACGGATGTAACAGTCAGGGTAGGCCTTCTTGCACTCCTCGAGCTCAGCGTACACCTGGGTGGCCTCGGTGCAGCCGAACATGGGCAGCTTCCACA
TGGTCCAGTAGCGCCCGTCGTAGTAACAGGGAGACCTGCTGTTCTCACGAAAGACGAACCCGACCTTGCTGAACTCGAGGCAGGGGATCCAGTTGTTCCG
GATCAGGTACTCGACCTGCTTCAGGAGCTGGTCGGTTGAGAGAGGTGGCCGAGGAGGCCATCACGGTCGGCGCCATGGCTTACTAGCTAGTGCTAGTATA
CGCTTACTAGTACTGTATTTACGAAGGAGAAGAAGAGGCAGTCTTGCTTGAGAGGCTCC