Detailed information on CNT30672806


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697684Setaria viridisOryza sativa46.0318.2787.77139forward
CNT30555702Setaria viridisOryza glaberrima46.3612.0487.86140forward
CNT30371513Setaria viridisOryza glumipatula28.488.0489.5386forward
CNT30104336Setaria viridisOryza rufipogon46.3612.5387.86140forward
CNT30578504Setaria viridisOryza barthii35.439.6788.79107forward

Expression of CNT30672806

Peptides detected in this lncRNA

>peptide 1 (99 aa)
SFSLSRLCIFLVLFNSVFLLLQWSGRSDNRFSRLHRHISVLHCIFTRGLLCCILASFSIFGFFSFRGLLFLLPALSASRVPAAFRDLLTFWAIKNLDFLT

>peptide 2 (99 aa)
ASASAGFASSLFSSTASFFSSNGAGGATTDSAGFIATSVSFTASSPGASSAASLPASASLASSVSGASFFSCLPFLPVEFLLRFGIFSPSGLSKTLTFSL

>peptide 3 (96 aa)
QLQPQQALHLPCSLQQRLSSPPMEREERQQIQQASSPHQCPSLHLHQGPPLLHPCQLQHLWLLQFQGPPFSPACPFCQSSSCCVSGSSHLLGYQKP*

Sequence

>CNT30672806
CAGCTTCAGCCTCAGCAGGCTTTGCATCTTCCTTGTTCTCTTCAACAGCGTCTTTCTTCTCCTCCAATGGAGCGGGAGGAGCGACAACAGATTCAGCAGG
CTTCATCGCCACATCAGTGTCCTTCACTGCATCTTCACCAGGGGCCTCCTCTGCTGCATCCTTGCCAGCTTCAGCATCTTTGGCTTCTTCAGTTTCAGGG
GCCTCCTTTTTCTCCTGCCTGCCCTTTCTGCCAGTCGAGTTCCTGCTGCGTTTCGGGATCTTCTCACCTTCTGGGCTATCAAAAACCTTGACTTTCTCAC
TA