Detailed information on CNT30672783


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT001703, E-value = 2e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30233912Setaria viridisBrassica oleracea40.6490.1892.08202forward
CNT30645139Setaria viridisCannabis sativa45.6782.2592.07227forward

Expression of CNT30672783

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MMMTWEELGLLLKLLTGSDHVLDEVTVSRGINDCAVVLGGLELPQGNINGDTPLTLSLELVKHPRILEGPLVHLSGLLLEPLDHTLVNTSKLVDQ

>peptide 2 (88 aa)
LREGLHHHGLGGNHLHHTSITILQELGLLLKLLTGSSVDLGNELSKLDSNVGGVAVQHWGVAIANLPRVVHDDDLGGTWAPSQAPYRI*

>peptide 3 (60 aa)
SEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

>peptide 4 (44 aa)
MVIPLSRSALSLSSTHAYLKDLLFISAASFSNLSITRLSIPPSL*

>peptide 5 (41 aa)
TQRRSPPPWAWWESSSPYQHHHSSGTWAPSQAPYRIVCRSW*

Sequence

>CNT30672783
ACTCAGAGAAGGTCTCCACCACCATGGGCTTGGTGGGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTT
ACCGGATCGTCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCATTGCCAATCTGC
CCAGGGTGGTTCATGATGATGACCTGGGAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCGGATCTGATCATGTTCTTGATGAAGTCACGGTGTCCAGGG
GCATCAATGACTGTGCAGTAGTACTTGGTGGTCTCGAACTTCCACAGGGCAATATCAATGGTGATACCCCTCTCACGCTCAGCCTTGAGCTTGTCAAGCA
CCCACGCATACTTGAAGGACCTCTTGTTCATCTCAGCGGCCTCCTTCTCGAACCTCTCGATCACACGCTTGTCAATACCTCCAAGCTTGTAGATCAG