Detailed information on CNT30672771


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30386304Setaria viridisTriticum turgidum29.718.2292.8698forward
CNT3017553Setaria viridisZea mays30.338.7692100forward
CNT30604057Setaria viridisOryza punctata29.0924.1294.7996forward
CNT30558323Setaria viridisPanicum hallii21.2112.6494.2970forward

Expression of CNT30672771

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MLNSQVQKHKHREMYNAKRRKTEEEDIAKTKSRRAVSLNMI*

>peptide 2 (39 aa)
MPMPSSQAAQLVALPTRGMELILVKVSTLKVAPHMTPSL*

>peptide 3 (36 aa)
LKQTLIIDHAQQPSPEAQAQGNVQCQEEEDRRGRYS*

Sequence

>CNT30672771
TTTGAAGCAAACTCTTATTATTGATCATGCTCAACAGCCAAGTCCAGAAGCACAAGCACAGGGAAATGTACAATGCCAAGAGGAGGAAGACAGAAGAGGA
AGATATAGCTAAAACAAAGAGCAGAAGAGCAGTGTCTCTGAATATGATCTAGATGCCCATGCCTTCGTCCCAGGCGGCCCAGTTGGTGGCGCTTCCGACG
CGTGGCATGGAGTTAATCTTGGTGAAGGTATCGACCTTGAAGGTGGCGCCGCACATGACGCCCTCGCTGTAGAAGAGGAGAGAAGAGAAGAGGGAGGGAC
GGATCTGAATGGGGAATGGAATGGAATGGG