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Detailed information on CNT30672753


BLAST search results

BLAST vs Swiss-Prot:
sp|P17786|EF1A_SOLLC, E-value = 4e-109

BLAST vs NONCODE:
NONGMAT001703, E-value = 1e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30426787Setaria viridisPapaver somniferum54.243.3881.8478forward
CNT30706378Setaria viridisPrunus avium65.5351.1582.53578forward
CNT3052982Setaria viridisAmborella trichopoda64.7443.6584.59571forward
CNT30724009Setaria viridisLupinus angustifolius68.9355.9982.4608forward

Expression of CNT30672753

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEGHPWSWRPRTHA*

>peptide 2 (30 aa)
MTPTQPFASCHGQQNDQEEGTQRRSPPPWA*

Sequence

>CNT30672753
CCAAATATAAAAACTGTATGTAAACATCAAACAGACCGAGGACACATTGCCAGCTGAGATTAATAGTTCACGAGATAACAGCAATGGCCATAGACAAAAC
TTAAGTGATATTATAGCATCTAGGCATGCCAAAAGCAGAAGTGGAATCAACCACCAGACACATCATTTCTTCTTGGCTGCAGCCTTAGTCACCTTGGCGC
CCGTTGGGTCCTTCTTCTCCACGCTCTTGATGACTCCAACACAACCGTTTGCCTCATGTCACGGACAGCAAAACGACCAAGAGGAGGGTACTCAGAGAAG
GTCTCCACCACCATGGGCTTAGTGGGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGAACTTGGGTTCCTTCTCAAGCTCCTTACCAGATCGTC
TGTCAATCTTGGTAATGAGCTCAGCAAACTTGACAGCAATGTGGGAGGGTCATCCTTGGAGTTGGAGGCCACGAACCCACGCTTGAGATCCTTCACAGCA
ACGTTCTTCACGTTGAACCCAACGTTGTCACCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCTCGACTGACTTCACCTCAGTAGTCAGGCCAGTGG
GACCAAAGGTGACAAGCATACCAGGCTTGATGATACCGGTCTCAACACGGCCAACAGGGACGGTTCCAATACCACCGATCTTGTACACATCCTGAAGGGG
AAGACGGAGGGGCTTGTCCGAAGGCCTCTTGGGCTCGTTGATCTGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAAACCAGAGATTGGGACGAAG
GCAATCTTGTCAGGGTTGTATCCCACCTTCTTCAGGTAGGAGGAGACTTCCTTCACAATCTCATCATAACGGGCCTTGGAGT