CANTATAdb - search

Detailed information on CNT30672683

BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 4e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30582252	Setaria viridis	Echinochloa crusgalli	44.3	41.27	95.96	272	forward

Expression of CNT30672683

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MPPKKKPPVNLAQPSAVCSLSASFLRPVSVSVGAVDGQTLRMVTSPAAPRAPAWPCTGVLRSGPVRAKGPTRR*

>peptide 2 (29 aa)
MSGLEVMGVSRLPMKGSPLMGCTTWYVVCS

Sequence

>CNT30672683
CATTAATTTTATCCCCAAGTAAATTAACTCCATCCAAGTAAGAAATCAACAGTTCAAGTTCCAAGTTACTTGAAGTACATTTATACACGTGCTCACTGCT
CAATCAACGACCTCATCGCCTACCCATGCACGCACACGCATGTAGAGAGGACGTCTACTTGAAGTAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAG
GCCCAGACCACGCCGGAGATGCCGCCGAAGAAGAAGCCTCCGGTGAACTTGGCCCAGCCGTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCGG
TGAGCGTGAGCGTGGGCGCCGTGGACGGGCAGACGCTGAGGATGGTGACGAGCCCGGCGGCGCCCAGGGCGCCCGCCTGGCCGTGCACGGGCGTGTTGCG
GAGCGGGCCGGTGAGGGCGAAGGGGCCCACGAGGAGGTAGCCGTGCGCAAGCCCGACCTCGATGCCGCGGAGCAGCGGGCTCACGGCGGTGCGGTAGGCC
GGGAGGTTGGAGAGGTACCAGGCGATGAGCGGGCTGGAGGTGATGGGCGTCTCCAGGCTGCCGATGAAGGGGTCGCCGTTGATGGGCTGCACCACCTGGT
ACGTTGTCTGCTCA