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Detailed information on CNT30672671


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690383Setaria viridisOryza sativa23.2114.0390.4394forward
CNT30520803Setaria viridisSetaria italica48.1544.0288.21195forward
CNT30286278Setaria viridisTriticum aestivum21.7330.1492.0588forward
CNT30383152Setaria viridisTriticum turgidum21.7314.0892.0588forward
CNT30552437Setaria viridisOryza glaberrima23.2122.2790.4394forward
CNT30255378Setaria viridisAvena sativa21.9820.9491.0189forward
CNT30655558Setaria viridisTriticum dicoccoides21.7323.1692.0588forward
CNT3015104Setaria viridisZea mays22.4727.5892.3191forward
CNT30678966Setaria viridisTriticum urartu21.7317.1592.0588forward
CNT30719808Setaria viridisTriticum spelta21.7320.6692.0588forward
CNT30595633Setaria viridisOryza meridionalis23.2128.9290.4394forward
CNT30369401Setaria viridisOryza glumipatula23.2121.3290.4394forward
CNT30148777Setaria viridisBrachypodium distachyon20.999.5491.7685forward
CNT3099956Setaria viridisOryza rufipogon23.218.7790.4394forward
CNT30574749Setaria viridisOryza barthii23.2124.8790.4394forward
CNT30115687Setaria viridisOryza nivara23.2121.1790.4394forward

Expression of CNT30672671

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MAAAPQLQLQQEQPQLVPHLQPEPHPHLPLQQDMLMILLITRREAGTGAEEGVVLLALCFACDE

Sequence

>CNT30672671
ACCATTCACAGAAAGATCTTAGCCAAACTGTAATTACGTTTTCATTTCAATTGGGCATGTAACTTTTCCCCCAATAGGCAGGCACATATAATTTCCTTGA
TACAGCAGTGTTCAATTAACCACAATTTTCAGTCGGCAAGATCTTATTTAGACGCTGGCCTGCTACTATATAATACGTTCTGGGGGGTTCTCCTTCCTCC
TCGATCGTGCTCCATGGCGGCGGCGCCTCAGTTGCAGCTGCAGCAGGAGCAGCCGCAGCTGGTGCCGCACTTGCAGCCGGAGCCGCACCCGCATTTGCCG
TTGCAGCAAGACATGCTGATGATCTTGTTGATCACGAGAAGGGAAGCAGGAACTGGTGCTGAGGAAGGTGTAGTGCTTCTTGCGCTCTGCTTCGCTTGTG
ATGAG